PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 452aa    MW: 50392 Da    PI: 8.5564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737664genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057799123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  676737664 77 FICEICNKGFQRDQNLQLHKRGH 99
               89******************988 PP

2zf-C2H214.20.00012154176123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  676737664 154 WKCEKCSKKYAVQSDWKAHAKTC 176
                58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-67699No hitNo description
Gene3DG3DSA:3.30.160.606.7E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0227799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8037799IPR007087Zinc finger, C2H2
PfamPF121712.9E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355150119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-6149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSNLTSASGD QASVSSGNRT ETSGSNFHYN INPTQQQEQC FVQQSSLKKK RNQPGNPDPE  60
AEVMALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN LPWKLKQRSS KDVIRKKVYV  120
CPEPSCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCEKCS KKYAVQSDWK AHAKTCGTKE  180
YKCDCGTLFS RRDSFITHRA FCDALAEESA RAIPNPILNI QSSSSPPTPH HHHQIQQNIN  240
FSSSSQNIIS NNNLHGHEFH MKQEEPHHHF QNIPPWLASS NPNPNGNNGN FFPLASSSTT  300
TGRSNFHHPS PAMSATALLQ KAAQMGPTKS ATTPEEEEKS SSRPNAAYNN LITTTMAAAM  360
MTPPSEPVFG FQDYYMMNHH PHHQGVGEAF NGGFIAGDEK NDVADDGGGE TRDFLGLRSL  420
MSHNEILSFA NNLGNCIHTS AAERQQQYSH QD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116KLKQRSSKDVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740522.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_009106906.10.0PREDICTED: zinc finger protein MAGPIE isoform X1
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM4EQ150.0M4EQ15_BRARP; Uncharacterized protein
STRINGBra030886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7